1117 lines
24 KiB
C++
1117 lines
24 KiB
C++
#include "mat.h"
|
|
#include <stdlib.h>
|
|
#include <sys/types.h>
|
|
#include <sys/stat.h>
|
|
#include <fcntl.h>
|
|
#include <errno.h>
|
|
extern "C" {
|
|
extern ssize_t read(int, void *, size_t);
|
|
extern ssize_t write(int, const void *, size_t);
|
|
}
|
|
// TODO :
|
|
//
|
|
|
|
|
|
/*
|
|
* Templates first, specializations for BLAS next
|
|
*/
|
|
|
|
//row of
|
|
template <typename T>
|
|
const NRVec<T> NRMat<T>::row(const int i, int l) const
|
|
{
|
|
#ifdef DEBUG
|
|
if(i<0||i>=nn) laerror("illegal index in row()");
|
|
#endif
|
|
if(l < 0) l=mm;
|
|
NRVec<T> r(l);
|
|
LA_traits<T>::copy(&r[0],
|
|
#ifdef MATPTR
|
|
v[i]
|
|
#else
|
|
v+i*l
|
|
#endif
|
|
,l);
|
|
return r;
|
|
}
|
|
|
|
|
|
//raw I/O
|
|
template <typename T>
|
|
void NRMat<T>::put(int fd, bool dim, bool transp) const
|
|
{
|
|
errno=0;
|
|
if(dim)
|
|
{
|
|
if(sizeof(int) != write(fd,&(transp?mm:nn),sizeof(int))) laerror("cannot write");
|
|
if(sizeof(int) != write(fd,&(transp?nn:mm),sizeof(int))) laerror("cannot write");
|
|
}
|
|
|
|
if(transp) //not particularly efficient
|
|
{
|
|
for(int j=0; j<mm; ++j)
|
|
for(int i=0; i<nn; ++i)
|
|
LA_traits<T>::put(fd,
|
|
#ifdef MATPTR
|
|
v[i][j]
|
|
#else
|
|
v[i*mm+j]
|
|
#endif
|
|
,dim,transp);
|
|
}
|
|
else LA_traits<T>::multiput(nn*mm,fd,
|
|
#ifdef MATPTR
|
|
v[0]
|
|
#else
|
|
v
|
|
#endif
|
|
,dim);
|
|
}
|
|
|
|
template <typename T>
|
|
void NRMat<T>::get(int fd, bool dim, bool transp)
|
|
{
|
|
int nn0,mm0;
|
|
errno=0;
|
|
if(dim)
|
|
{
|
|
if(sizeof(int) != read(fd,&nn0,sizeof(int))) laerror("cannot read");
|
|
if(sizeof(int) != read(fd,&mm0,sizeof(int))) laerror("cannot read");
|
|
if(transp) resize(mm0,nn0); else resize(nn0,mm0);
|
|
}
|
|
else
|
|
copyonwrite();
|
|
if(transp) //not particularly efficient
|
|
{
|
|
for(int j=0; j<mm; ++j)
|
|
for(int i=0; i<nn; ++i)
|
|
LA_traits<T>::get(fd,
|
|
#ifdef MATPTR
|
|
v[i][j]
|
|
#else
|
|
v[i*mm+j]
|
|
#endif
|
|
,dim,transp);
|
|
}
|
|
else LA_traits<T>::multiget(nn*mm,fd,
|
|
#ifdef MATPTR
|
|
v[0]
|
|
#else
|
|
v
|
|
#endif
|
|
,dim);
|
|
}
|
|
|
|
|
|
|
|
|
|
// Assign diagonal
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator=(const T &a)
|
|
{
|
|
copyonwrite();
|
|
#ifdef DEBUG
|
|
if (nn != mm) laerror("RMat.operator=scalar on non-square matrix");
|
|
#endif
|
|
#ifdef MATPTR
|
|
memset(v[0],0,nn*nn*sizeof(T));
|
|
for (int i=0; i< nn; i++) v[i][i] = a;
|
|
#else
|
|
memset(v,0,nn*nn*sizeof(T));
|
|
for (int i=0; i< nn*nn; i+=nn+1) v[i] = a;
|
|
#endif
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
|
|
// M += a
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator+=(const T &a)
|
|
{
|
|
copyonwrite();
|
|
#ifdef DEBUG
|
|
if (nn != mm) laerror("Mat.operator+=scalar on non-square matrix");
|
|
#endif
|
|
#ifdef MATPTR
|
|
for (int i=0; i< nn; i++) v[i][i] += a;
|
|
#else
|
|
for (int i=0; i< nn*nn; i+=nn+1) v[i] += a;
|
|
#endif
|
|
return *this;
|
|
}
|
|
|
|
// M -= a
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator-=(const T &a)
|
|
{
|
|
copyonwrite();
|
|
#ifdef DEBUG
|
|
if (nn != mm) laerror("Mat.operator-=scalar on non-square matrix");
|
|
#endif
|
|
#ifdef MATPTR
|
|
for (int i=0; i< nn; i++) v[i][i] -= a;
|
|
#else
|
|
for (int i=0; i< nn*nn; i+=nn+1) v[i] -= a;
|
|
#endif
|
|
return *this;
|
|
}
|
|
|
|
// unary minus
|
|
template <typename T>
|
|
const NRMat<T> NRMat<T>::operator-() const
|
|
{
|
|
NRMat<T> result(nn, mm);
|
|
#ifdef MATPTR
|
|
for (int i=0; i<nn*mm; i++) result.v[0][i]= -v[0][i];
|
|
#else
|
|
for (int i=0; i<nn*mm; i++) result.v[i]= -v[i];
|
|
#endif
|
|
return result;
|
|
}
|
|
|
|
// direct sum
|
|
template <typename T>
|
|
const NRMat<T> NRMat<T>::operator&(const NRMat<T> & b) const
|
|
{
|
|
NRMat<T> result((T)0, nn+b.nn, mm+b.mm);
|
|
for (int i=0; i<nn; i++) memcpy(result[i], (*this)[i], sizeof(T)*mm);
|
|
for (int i=0; i<b.nn; i++) memcpy(result[nn+i]+nn, b[i], sizeof(T)*b.mm);
|
|
return result;
|
|
}
|
|
|
|
// direct product
|
|
template <typename T>
|
|
const NRMat<T> NRMat<T>::operator|(const NRMat<T> &b) const
|
|
{
|
|
NRMat<T> result(nn*b.nn, mm*b.mm);
|
|
for (int i=0; i<nn; i++)
|
|
for (int j=0; j<mm; j++)
|
|
for (int k=0; k<b.nn; k++)
|
|
for (int l=0; l<b.mm; l++)
|
|
result[i*b.nn+k][j*b.mm+l] = (*this)[i][j]*b[k][l];
|
|
return result;
|
|
}
|
|
|
|
// sum of columns
|
|
template <typename T>
|
|
const NRVec<T> NRMat<T>::csum() const
|
|
{
|
|
NRVec<T> result(nn);
|
|
T sum;
|
|
|
|
for (int i=0; i<nn; i++) {
|
|
sum = (T)0;
|
|
for(int j=0; j<mm; j++) sum += (*this)[i][j];
|
|
result[i] = sum;
|
|
}
|
|
return result;
|
|
}
|
|
|
|
// sum of rows
|
|
template <typename T>
|
|
const NRVec<T> NRMat<T>::rsum() const
|
|
{
|
|
NRVec<T> result(nn);
|
|
T sum;
|
|
|
|
for (int i=0; i<mm; i++) {
|
|
sum = (T)0;
|
|
for(int j=0; j<nn; j++) sum += (*this)[j][i];
|
|
result[i] = sum;
|
|
}
|
|
return result;
|
|
}
|
|
|
|
//block submatrix
|
|
template <typename T>
|
|
const NRMat<T> NRMat<T>::submatrix(const int fromrow, const int torow, const int fromcol, const int tocol) const
|
|
{
|
|
#ifdef DEBUG
|
|
if(fromrow <0 ||fromrow >=nn||torow <0 ||torow >=nn ||fromcol<0||fromcol>=mm||tocol<0||tocol>=mm||fromrow>torow||fromcol>tocol) laerror("bad indices in submatrix");
|
|
#endif
|
|
int n=torow-fromrow+1;
|
|
int m=tocol-fromcol+1;
|
|
NRMat<T> r(n,m);
|
|
for(int i=fromrow; i<=torow; ++i)
|
|
#ifdef MATPTR
|
|
memcpy(r.v[i-fromrow],v[i]+fromcol,m*sizeof(T));
|
|
#else
|
|
memcpy(r.v+(i-fromrow)*m,v+i*mm+fromcol,m*sizeof(T));
|
|
#endif
|
|
return r;
|
|
}
|
|
|
|
|
|
// transpose Mat
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::transposeme(int n)
|
|
{
|
|
if(n==0) n=nn;
|
|
#ifdef DEBUG
|
|
if (n==nn && nn != mm || n>mm || n>nn) laerror("transpose of non-square Mat");
|
|
#endif
|
|
copyonwrite();
|
|
for(int i=1; i<n; i++)
|
|
for(int j=0; j<i; j++) {
|
|
#ifdef MATPTR
|
|
T tmp = v[i][j];
|
|
v[i][j] = v[j][i];
|
|
v[j][i] = tmp;
|
|
#else
|
|
register int a;
|
|
register int b;
|
|
a = i*mm+j;
|
|
b = j*mm+i;
|
|
T tmp = v[a];
|
|
v[a] = v[b];
|
|
v[b] = tmp;
|
|
#endif
|
|
}
|
|
return *this;
|
|
}
|
|
|
|
// Output of Mat
|
|
template <typename T>
|
|
void NRMat<T>::fprintf(FILE *file, const char *format, const int modulo) const
|
|
{
|
|
lawritemat(file, (const T*)(*this), nn, mm, format, 2, modulo, 0);
|
|
}
|
|
|
|
// Input of Mat
|
|
template <typename T>
|
|
void NRMat<T>::fscanf(FILE *f, const char *format)
|
|
{
|
|
int n, m;
|
|
if (std::fscanf(f, "%d %d", &n, &m) != 2)
|
|
laerror("cannot read matrix dimensions in Mat::fscanf()");
|
|
resize(n,m);
|
|
T *p = *this;
|
|
for(int i=0; i<n; i++)
|
|
for(int j=0; j<n; j++)
|
|
if(std::fscanf(f,format,p++) != 1)
|
|
laerror("cannot read matrix element in Mat::fscanf()");
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
/*
|
|
* BLAS specializations for double and complex<double>
|
|
*/
|
|
|
|
template<>
|
|
const NRSMat<double> NRMat<double>::transposedtimes() const
|
|
{
|
|
NRSMat<double> r(mm,mm);
|
|
int i,j;
|
|
for(i=0; i<mm; ++i) for(j=0; j<=i; ++j)
|
|
#ifdef MATPTR
|
|
r(i,j) = cblas_ddot(nn,v[0]+i,mm,v[0]+j,mm);
|
|
#else
|
|
r(i,j) = cblas_ddot(nn,v+i,mm,v+j,mm);
|
|
#endif
|
|
return r;
|
|
}
|
|
|
|
template<>
|
|
const NRSMat<complex<double> > NRMat<complex<double> >::transposedtimes() const
|
|
{
|
|
NRSMat<complex<double> > r(mm,mm);
|
|
int i,j;
|
|
for(i=0; i<mm; ++i) for(j=0; j<=i; ++j)
|
|
#ifdef MATPTR
|
|
cblas_zdotc_sub(nn, v[0]+i , mm,v[0]+j, mm, (void *)(&r(i,j)));
|
|
#else
|
|
cblas_zdotc_sub(nn, v+i , mm,v+j, mm, (void *)(&r(i,j)));
|
|
#endif
|
|
return r;
|
|
}
|
|
|
|
|
|
|
|
//and for general type
|
|
template <typename T>
|
|
const NRSMat<T> NRMat<T>::transposedtimes() const
|
|
{
|
|
NRSMat<T> r(mm,mm);
|
|
int i,j;
|
|
for(i=0; i<mm; ++i) for(j=0; j<=i; ++j)
|
|
{
|
|
T s =(T)0;
|
|
for(int k=0; k<nn; ++k) s+= (*this)(k,i) * (*this)(k,j);
|
|
r(i,j)=s;
|
|
}
|
|
return r;
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
const NRSMat<double> NRMat<double>::timestransposed() const
|
|
{
|
|
NRSMat<double> r(nn,nn);
|
|
int i,j;
|
|
for(i=0; i<nn; ++i) for(j=0; j<=i; ++j)
|
|
#ifdef MATPTR
|
|
r(i,j) = cblas_ddot(mm,v[i],1,v[j],1);
|
|
#else
|
|
r(i,j) = cblas_ddot(mm,v+i*mm,1,v+j*mm,1);
|
|
#endif
|
|
return r;
|
|
}
|
|
|
|
template<>
|
|
const NRSMat<complex<double> > NRMat<complex<double> >::timestransposed() const
|
|
{
|
|
NRSMat<complex<double> > r(nn,nn);
|
|
int i,j;
|
|
for(i=0; i<nn; ++i) for(j=0; j<=i; ++j)
|
|
#ifdef MATPTR
|
|
cblas_zdotc_sub(mm, v[i] , 1,v[j], 1, (void *)(&r(i,j)));
|
|
#else
|
|
cblas_zdotc_sub(mm, v+i*mm , 1,v+j*mm, 1, (void *)(&r(i,j)));
|
|
#endif
|
|
return r;
|
|
}
|
|
|
|
|
|
|
|
//and for general type
|
|
template <typename T>
|
|
const NRSMat<T> NRMat<T>::timestransposed() const
|
|
{
|
|
NRSMat<T> r(nn,nn);
|
|
int i,j;
|
|
for(i=0; i<nn; ++i) for(j=0; j<=i; ++j)
|
|
{
|
|
T s =(T)0;
|
|
for(int k=0; k<mm; ++k) s+= (*this)(i,k) * (*this)(j,k);
|
|
r(i,j)=s;
|
|
}
|
|
return r;
|
|
}
|
|
|
|
|
|
|
|
|
|
// Mat *= a
|
|
template<>
|
|
NRMat<double> & NRMat<double>::operator*=(const double &a)
|
|
{
|
|
copyonwrite();
|
|
cblas_dscal(nn*mm, a, *this, 1);
|
|
return *this;
|
|
}
|
|
|
|
|
|
template<>
|
|
NRMat< complex<double> > &
|
|
NRMat< complex<double> >::operator*=(const complex<double> &a)
|
|
{
|
|
copyonwrite();
|
|
cblas_zscal(nn*mm, &a, (void *)(*this)[0], 1);
|
|
return *this;
|
|
}
|
|
|
|
|
|
//and for general type
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator*=(const T &a)
|
|
{
|
|
copyonwrite();
|
|
#ifdef MATPTR
|
|
for (int i=0; i< nn*nn; i++) v[0][i] *= a;
|
|
#else
|
|
for (int i=0; i< nn*nn; i++) v[i] *= a;
|
|
#endif
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
// Mat += Mat
|
|
template<>
|
|
NRMat<double> & NRMat<double>::operator+=(const NRMat<double> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.nn || mm!= rhs.mm)
|
|
laerror("Mat += Mat of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
cblas_daxpy(nn*mm, 1.0, rhs, 1, *this, 1);
|
|
return *this;
|
|
}
|
|
|
|
|
|
template<>
|
|
NRMat< complex<double> > &
|
|
NRMat< complex<double> >::operator+=(const NRMat< complex<double> > &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.nn || mm!= rhs.mm)
|
|
laerror("Mat += Mat of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
cblas_zaxpy(nn*mm, &CONE, (void *)rhs[0], 1, (void *)(*this)[0], 1);
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
//and for general type
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator+=(const NRMat<T> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.nn || mm!= rhs.mm)
|
|
laerror("Mat -= Mat of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
#ifdef MATPTR
|
|
for (int i=0; i< nn*nn; i++) v[0][i] += rhs.v[0][i] ;
|
|
#else
|
|
for (int i=0; i< nn*nn; i++) v[i] += rhs.v[i] ;
|
|
#endif
|
|
return *this;
|
|
}
|
|
|
|
|
|
// Mat -= Mat
|
|
template<>
|
|
NRMat<double> & NRMat<double>::operator-=(const NRMat<double> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.nn || mm!= rhs.mm)
|
|
laerror("Mat -= Mat of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
cblas_daxpy(nn*mm, -1.0, rhs, 1, *this, 1);
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
NRMat< complex<double> > &
|
|
NRMat< complex<double> >::operator-=(const NRMat< complex<double> > &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.nn || mm!= rhs.mm)
|
|
laerror("Mat -= Mat of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
cblas_zaxpy(nn*mm, &CMONE, (void *)rhs[0], 1, (void *)(*this)[0], 1);
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
//and for general type
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator-=(const NRMat<T> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.nn || mm!= rhs.mm)
|
|
laerror("Mat -= Mat of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
#ifdef MATPTR
|
|
for (int i=0; i< nn*nn; i++) v[0][i] -= rhs.v[0][i] ;
|
|
#else
|
|
for (int i=0; i< nn*nn; i++) v[i] -= rhs.v[i] ;
|
|
#endif
|
|
return *this;
|
|
}
|
|
|
|
|
|
// Mat += SMat
|
|
template<>
|
|
NRMat<double> & NRMat<double>::operator+=(const NRSMat<double> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mm || nn!=rhs.nrows()) laerror("incompatible matrix size in Mat+=SMat");
|
|
#endif
|
|
const double *p = rhs;
|
|
copyonwrite();
|
|
for (int i=0; i<nn; i++) {
|
|
cblas_daxpy(i+1, 1.0, p, 1, (*this)[i], 1);
|
|
p += i+1;
|
|
}
|
|
p = rhs; p++;
|
|
for (int i=1; i<nn; i++) {
|
|
cblas_daxpy(i, 1.0, p, 1, (*this)[0]+i, nn);
|
|
p += i+1;
|
|
}
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
NRMat< complex<double> > &
|
|
NRMat< complex<double> >::operator+=(const NRSMat< complex<double> > &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mm || nn!=rhs.nrows()) laerror("incompatible matrix size in Mat+=SMat");
|
|
#endif
|
|
const complex<double> *p = rhs;
|
|
copyonwrite();
|
|
for (int i=0; i<nn; i++) {
|
|
cblas_zaxpy(i+1, (void *)&CONE, (void *)p, 1, (void *)(*this)[i], 1);
|
|
p += i+1;
|
|
}
|
|
p = rhs; p++;
|
|
for (int i=1; i<nn; i++) {
|
|
cblas_zaxpy(i, (void *)&CONE, (void *)p, 1, (void *)((*this)[i]+i), nn);
|
|
p += i+1;
|
|
}
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
|
|
//and for general type
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator+=(const NRSMat<T> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mm || nn!=rhs.nrows()) laerror("incompatible matrix size in Mat+=SMat");
|
|
#endif
|
|
const T *p = rhs;
|
|
copyonwrite();
|
|
for (int i=0; i<nn; i++) {
|
|
for(int j=0; j<i+1; ++j) *((*this)[i]+j) += p[j];
|
|
p += i+1;
|
|
}
|
|
p = rhs; p++;
|
|
for (int i=1; i<nn; i++) {
|
|
for(int j=0; j<i; ++j) *((*this)[i]+i+nn*j) += p[j];
|
|
p += i+1;
|
|
}
|
|
return *this;
|
|
}
|
|
|
|
|
|
// Mat -= SMat
|
|
template<>
|
|
NRMat<double> & NRMat<double>::operator-=(const NRSMat<double> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mm || nn!=rhs.nrows()) laerror("incompatible matrix size in Mat-=SMat");
|
|
#endif
|
|
const double *p = rhs;
|
|
copyonwrite();
|
|
for (int i=0; i<nn; i++) {
|
|
cblas_daxpy(i+1, -1.0, p, 1, (*this)[i], 1);
|
|
p += i+1;
|
|
}
|
|
p = rhs; p++;
|
|
for (int i=1; i<nn; i++) {
|
|
cblas_daxpy(i, -1.0, p, 1, (*this)[0]+i, nn);
|
|
p += i+1;
|
|
}
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
NRMat< complex<double> > &
|
|
NRMat< complex<double> >::operator-=(const NRSMat< complex<double> > &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mm || nn!=rhs.nrows()) laerror("incompatible matrix size in Mat-=SMat");
|
|
#endif
|
|
const complex<double> *p = rhs;
|
|
copyonwrite();
|
|
for (int i=0; i<nn; i++) {
|
|
cblas_zaxpy(i+1, (void *)&CMONE, (void *)p, 1, (void *)(*this)[i], 1);
|
|
p += i+1;
|
|
}
|
|
p = rhs; p++;
|
|
for (int i=1; i<nn; i++) {
|
|
cblas_zaxpy(i, (void *)&CMONE, (void *)p, 1, (void *)((*this)[i]+i), nn);
|
|
p += i+1;
|
|
}
|
|
return *this;
|
|
}
|
|
|
|
|
|
//and for general type
|
|
template <typename T>
|
|
NRMat<T> & NRMat<T>::operator-=(const NRSMat<T> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mm || nn!=rhs.nrows()) laerror("incompatible matrix size in Mat+=SMat");
|
|
#endif
|
|
const T *p = rhs;
|
|
copyonwrite();
|
|
for (int i=0; i<nn; i++) {
|
|
for(int j=0; j<i+1; ++j) *((*this)[i]+j) -= p[j];
|
|
p += i+1;
|
|
}
|
|
p = rhs; p++;
|
|
for (int i=1; i<nn; i++) {
|
|
for(int j=0; j<i; ++j) *((*this)[i]+i+nn*j) -= p[j];
|
|
p += i+1;
|
|
}
|
|
return *this;
|
|
}
|
|
|
|
|
|
|
|
|
|
// Mat.Mat - scalar product
|
|
template<>
|
|
const double NRMat<double>::dot(const NRMat<double> &rhs) const
|
|
{
|
|
#ifdef DEBUG
|
|
if(nn!=rhs.nn || mm!= rhs.mm) laerror("Mat.Mat incompatible matrices");
|
|
#endif
|
|
return cblas_ddot(nn*mm, (*this)[0], 1, rhs[0], 1);
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
const complex<double>
|
|
NRMat< complex<double> >::dot(const NRMat< complex<double> > &rhs) const
|
|
{
|
|
#ifdef DEBUG
|
|
if(nn!=rhs.nn || mm!= rhs.mm) laerror("Mat.Mat incompatible matrices");
|
|
#endif
|
|
complex<double> dot;
|
|
cblas_zdotc_sub(nn*mm, (void *)(*this)[0], 1, (void *)rhs[0], 1,
|
|
(void *)(&dot));
|
|
return dot;
|
|
}
|
|
|
|
// Mat * Mat
|
|
template<>
|
|
const NRMat<double> NRMat<double>::operator*(const NRMat<double> &rhs) const
|
|
{
|
|
#ifdef DEBUG
|
|
if (mm != rhs.nn) laerror("product of incompatible matrices");
|
|
#endif
|
|
NRMat<double> result(nn, rhs.mm);
|
|
cblas_dgemm(CblasRowMajor, CblasNoTrans, CblasNoTrans, nn, rhs.mm, mm, 1.0,
|
|
*this, mm, rhs, rhs.mm, 0.0, result, rhs.mm);
|
|
return result;
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
const NRMat< complex<double> >
|
|
NRMat< complex<double> >::operator*(const NRMat< complex<double> > &rhs) const
|
|
{
|
|
#ifdef DEBUG
|
|
if (mm != rhs.nn) laerror("product of incompatible matrices");
|
|
#endif
|
|
NRMat< complex<double> > result(nn, rhs.mm);
|
|
cblas_zgemm(CblasRowMajor, CblasNoTrans, CblasNoTrans, nn, rhs.mm, mm,
|
|
(const void *)(&CONE),(const void *)(*this)[0], mm, (const void *)rhs[0],
|
|
rhs.mm, (const void *)(&CZERO), (void *)result[0], rhs.mm);
|
|
return result;
|
|
}
|
|
|
|
|
|
// Multiply by diagonal from L
|
|
template<>
|
|
void NRMat<double>::diagmultl(const NRVec<double> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.size()) laerror("incompatible matrix dimension in diagmultl");
|
|
#endif
|
|
copyonwrite();
|
|
for(int i=0; i<nn; i++) cblas_dscal(mm, rhs[i], (*this)[i], 1);
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
void NRMat< complex<double> >::diagmultl(const NRVec< complex<double> > &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != rhs.size()) laerror("incompatible matrix dimension in diagmultl");
|
|
#endif
|
|
copyonwrite();
|
|
for (int i=0; i<nn; i++) cblas_zscal(mm, &rhs[i], (*this)[i], 1);
|
|
}
|
|
|
|
|
|
|
|
|
|
// Multiply by diagonal from R
|
|
template<>
|
|
void NRMat<double>::diagmultr(const NRVec<double> &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (mm != rhs.size()) laerror("incompatible matrix dimension in diagmultr");
|
|
#endif
|
|
copyonwrite();
|
|
for (int i=0; i<mm; i++) cblas_dscal(nn, rhs[i], (*this)[i], mm);
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
void NRMat< complex<double> >::diagmultr(const NRVec< complex<double> > &rhs)
|
|
{
|
|
#ifdef DEBUG
|
|
if (mm != rhs.size()) laerror("incompatible matrix dimension in diagmultl");
|
|
#endif
|
|
copyonwrite();
|
|
for (int i=0; i<mm; i++) cblas_zscal(nn, &rhs[i], (*this)[i], mm);
|
|
}
|
|
|
|
|
|
|
|
|
|
// Mat * Smat, decomposed to nn x Vec * Smat
|
|
//NOTE: dsymm is not appropriate as it works on UNPACKED symmetric matrix
|
|
template<>
|
|
const NRMat<double>
|
|
NRMat<double>::operator*(const NRSMat<double> &rhs) const
|
|
{
|
|
#ifdef DEBUG
|
|
if (mm != rhs.nrows()) laerror("incompatible dimension in Mat*SMat");
|
|
#endif
|
|
NRMat<double> result(nn, rhs.ncols());
|
|
for (int i=0; i<nn; i++)
|
|
cblas_dspmv(CblasRowMajor, CblasLower, mm, 1.0, &rhs[0],
|
|
(*this)[i], 1, 0.0, result[i], 1);
|
|
return result;
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
const NRMat< complex<double> >
|
|
NRMat< complex<double> >::operator*(const NRSMat< complex<double> > &rhs) const
|
|
{
|
|
#ifdef DEBUG
|
|
if (mm != rhs.nrows()) laerror("incompatible dimension in Mat*SMat");
|
|
#endif
|
|
NRMat< complex<double> > result(nn, rhs.ncols());
|
|
for (int i=0; i<nn; i++)
|
|
cblas_zhpmv(CblasRowMajor, CblasLower, mm, (void *)&CONE, (void *)&rhs[0],
|
|
(void *)(*this)[i], 1, (void *)&CZERO, (void *)result[i], 1);
|
|
return result;
|
|
}
|
|
|
|
|
|
|
|
// sum of rows
|
|
template<>
|
|
const NRVec<double> NRMat<double>::rsum() const
|
|
{
|
|
NRVec<double> result(mm);
|
|
for (int i=0; i<mm; i++) result[i] = cblas_dasum(nn,(*this)[0]+i,mm);
|
|
return result;
|
|
}
|
|
|
|
// sum of columns
|
|
template<>
|
|
const NRVec<double> NRMat<double>::csum() const
|
|
{
|
|
NRVec<double> result(nn);
|
|
for (int i=0; i<nn; i++) result[i] = cblas_dasum(mm, (*this)[i], 1);
|
|
return result;
|
|
}
|
|
|
|
// complex conjugate of Mat
|
|
template<>
|
|
NRMat<double> &NRMat<double>::conjugateme() {return *this;}
|
|
|
|
template<>
|
|
NRMat< complex<double> > & NRMat< complex<double> >::conjugateme()
|
|
{
|
|
copyonwrite();
|
|
cblas_dscal(mm*nn, -1.0, (double *)((*this)[0])+1, 2);
|
|
return *this;
|
|
}
|
|
|
|
// transpose and optionally conjugate
|
|
template<>
|
|
const NRMat<double> NRMat<double>::transpose(bool conj) const
|
|
{
|
|
NRMat<double> result(mm,nn);
|
|
for(int i=0; i<nn; i++) cblas_dcopy(mm, (*this)[i], 1, result[0]+i, nn);
|
|
return result;
|
|
}
|
|
template<>
|
|
const NRMat< complex<double> >
|
|
NRMat< complex<double> >::transpose(bool conj) const
|
|
{
|
|
NRMat< complex<double> > result(mm,nn);
|
|
for (int i=0; i<nn; i++)
|
|
cblas_zcopy(mm, (void *)(*this)[i], 1, (void *)(result[0]+i), nn);
|
|
if (conj) cblas_dscal(mm*nn, -1.0, (double *)(result[0])+1, 2);
|
|
return result;
|
|
}
|
|
|
|
// gemm : this = alpha*op( A )*op( B ) + beta*this
|
|
template<>
|
|
void NRMat<double>::gemm(const double &beta, const NRMat<double> &a,
|
|
const char transa, const NRMat<double> &b, const char transb,
|
|
const double &alpha)
|
|
{
|
|
int k(transa=='n'?a.mm:a.nn);
|
|
|
|
#ifdef DEBUG
|
|
int l(transa=='n'?a.nn:a.mm);
|
|
int kk(transb=='n'?b.nn:b.mm);
|
|
int ll(transb=='n'?b.mm:b.nn);
|
|
if (l!=nn || ll!=mm || k!=kk) laerror("incompatible matrices in Mat:gemm()");
|
|
#endif
|
|
if (alpha==0.0 && beta==1.0) return;
|
|
|
|
copyonwrite();
|
|
cblas_dgemm(CblasRowMajor, (transa=='n' ? CblasNoTrans : CblasTrans),
|
|
(transb=='n' ? CblasNoTrans : CblasTrans), nn, mm, k, alpha, a,
|
|
a.mm, b , b.mm, beta, *this , mm);
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
void NRMat< complex<double> >::gemm(const complex<double> & beta,
|
|
const NRMat< complex<double> > & a, const char transa,
|
|
const NRMat< complex<double> > & b, const char transb,
|
|
const complex<double> & alpha)
|
|
{
|
|
int k(transa=='n'?a.mm:a.nn);
|
|
|
|
#ifdef DEBUG
|
|
int l(transa=='n'?a.nn:a.mm);
|
|
int kk(transb=='n'?b.nn:b.mm);
|
|
int ll(transb=='n'?b.mm:b.nn);
|
|
if (l!=nn || ll!=mm || k!=kk) laerror("incompatible matrices in Mat:gemm()");
|
|
#endif
|
|
if (alpha==CZERO && beta==CONE) return;
|
|
|
|
copyonwrite();
|
|
cblas_zgemm(CblasRowMajor,
|
|
(transa=='n' ? CblasNoTrans : (transa=='c'?CblasConjTrans:CblasTrans)),
|
|
(transb=='n' ? CblasNoTrans : (transa=='c'?CblasConjTrans:CblasTrans)),
|
|
nn, mm, k, &alpha, a , a.mm, b , b.mm, &beta, *this , mm);
|
|
}
|
|
|
|
// norm of Mat
|
|
template<>
|
|
const double NRMat<double>::norm(const double scalar) const
|
|
{
|
|
if (!scalar) return cblas_dnrm2(nn*mm, (*this)[0], 1);
|
|
double sum = 0;
|
|
for (int i=0; i<nn; i++)
|
|
for (int j=0; j<mm; j++) {
|
|
register double tmp;
|
|
#ifdef MATPTR
|
|
tmp = v[i][j];
|
|
#else
|
|
tmp = v[i*mm+j];
|
|
#endif
|
|
if (i==j) tmp -= scalar;
|
|
sum += tmp*tmp;
|
|
}
|
|
return sqrt(sum);
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
const double NRMat< complex<double> >::norm(const complex<double> scalar) const
|
|
{
|
|
if (scalar == CZERO) return cblas_dznrm2(nn*mm, (*this)[0], 1);
|
|
double sum = 0;
|
|
for (int i=0; i<nn; i++)
|
|
for (int j=0; j<mm; j++) {
|
|
register complex<double> tmp;
|
|
#ifdef MATPTR
|
|
tmp = v[i][j];
|
|
#else
|
|
tmp = v[i*mm+j];
|
|
#endif
|
|
if (i==j) tmp -= scalar;
|
|
sum += tmp.real()*tmp.real()+tmp.imag()*tmp.imag();
|
|
}
|
|
return sqrt(sum);
|
|
}
|
|
|
|
|
|
|
|
|
|
// axpy: this = a * Mat
|
|
template<>
|
|
void NRMat<double>::axpy(const double alpha, const NRMat<double> &mat)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mat.nn || mm!=mat.mm) laerror("daxpy of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
cblas_daxpy(nn*mm, alpha, mat, 1, *this, 1);
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
void NRMat< complex<double> >::axpy(const complex<double> alpha,
|
|
const NRMat< complex<double> > & mat)
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn!=mat.nn || mm!=mat.mm) laerror("zaxpy of incompatible matrices");
|
|
#endif
|
|
copyonwrite();
|
|
cblas_zaxpy(nn*mm, (void *)&alpha, mat, 1, (void *)(*this)[0], 1);
|
|
}
|
|
|
|
|
|
|
|
|
|
// trace of Mat
|
|
template<>
|
|
const double NRMat<double>::trace() const
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != mm) laerror("no-square matrix in Mat::trace()");
|
|
#endif
|
|
return cblas_dasum(nn, (*this)[0], nn+1);
|
|
|
|
|
|
}
|
|
|
|
|
|
|
|
template<>
|
|
const complex<double> NRMat< complex<double> >::trace() const
|
|
{
|
|
#ifdef DEBUG
|
|
if (nn != mm) laerror("no-square matrix in Mat::trace()");
|
|
#endif
|
|
register complex<double> sum = CZERO;
|
|
for (int i=0; i<nn*nn; i+=(nn+1))
|
|
#ifdef MATPTR
|
|
sum += v[0][i];
|
|
#else
|
|
sum += v[i];
|
|
#endif
|
|
return sum;
|
|
}
|
|
|
|
|
|
|
|
//get diagonal; for compatibility with large matrices do not return newly created object
|
|
//for non-square get diagonal of A^TA, will be used as preconditioner
|
|
template<>
|
|
const double * NRMat<double>::diagonalof(NRVec<double> &r, const bool divide, bool cache) const
|
|
{
|
|
#ifdef DEBUG
|
|
if (r.size() != nn) laerror("diagonalof() incompatible vector");
|
|
#endif
|
|
|
|
double a;
|
|
|
|
r.copyonwrite();
|
|
|
|
if(nn==mm)
|
|
{
|
|
#ifdef MATPTR
|
|
if(divide) for (int i=0; i< nn; i++) if((a=v[i][i])) r[i]/=a;
|
|
else for (int i=0; i< nn; i++) r[i] = v[i][i];
|
|
#else
|
|
if(divide) {int i,j; for (i=j=0; j< nn; ++j, i+=nn+1) if((a=v[i])) r[j] /=a;}
|
|
else {int i,j; for (i=j=0; j< nn; ++j, i+=nn+1) r[j] = v[i];}
|
|
#endif
|
|
}
|
|
else //non-square
|
|
{
|
|
for (int i=0; i< mm; i++)
|
|
{
|
|
#ifdef MATPTR
|
|
a= cblas_ddot(nn,v[0]+i,mm,v[0]+i,mm);
|
|
#else
|
|
a=cblas_ddot(nn,v+i,mm,v+i,mm);
|
|
#endif
|
|
if(divide) {if(a) r[i]/=a;}
|
|
else r[i] = a;
|
|
}
|
|
}
|
|
|
|
return divide?NULL:&r[0];
|
|
}
|
|
|
|
|
|
|
|
//////////////////////////////////////////////////////////////////////////////
|
|
//// forced instantization in the corespoding object file
|
|
#define INSTANTIZE(T) \
|
|
template ostream & operator<<(ostream &s, const NRMat< T > &x); \
|
|
template istream & operator>>(istream &s, NRMat< T > &x); \
|
|
|
|
INSTANTIZE(double)
|
|
INSTANTIZE(complex<double>)
|
|
INSTANTIZE(int)
|
|
INSTANTIZE(short)
|
|
INSTANTIZE(char)
|
|
INSTANTIZE(unsigned char)
|
|
INSTANTIZE(unsigned long)
|
|
INSTANTIZE(unsigned int)
|
|
|
|
|
|
export template <typename T>
|
|
ostream& operator<<(ostream &s, const NRMat<T> &x)
|
|
{
|
|
int i,j,n,m;
|
|
n=x.nrows();
|
|
m=x.ncols();
|
|
s << n << ' ' << m << '\n';
|
|
for(i=0;i<n;i++)
|
|
{
|
|
for(j=0; j<m;j++) s << (typename LA_traits_io<T>::IOtype) x[i][j] << (j==m-1 ? '\n' : ' '); // endl cannot be used in the conditional expression, since it is an overloaded function
|
|
}
|
|
return s;
|
|
}
|
|
|
|
export template <typename T>
|
|
istream& operator>>(istream &s, NRMat<T> &x)
|
|
{
|
|
int i,j,n,m;
|
|
s >> n >> m;
|
|
x.resize(n,m);
|
|
typename LA_traits_io<T>::IOtype tmp;
|
|
for(i=0;i<n;i++) for(j=0; j<m;j++) { s>>tmp; x[i][j]=tmp;}
|
|
return s;
|
|
}
|
|
|
|
//direct sum and product (oplus, otimes) to be done
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
//////////////////////////////////////////////////////////////////////////////
|
|
//// forced instantization in the corresponding object file
|
|
template class NRMat<double>;
|
|
template class NRMat<complex<double> >;
|
|
template class NRMat<int>;
|
|
template class NRMat<short>;
|
|
template class NRMat<char>;
|
|
template class NRMat<unsigned char>;
|
|
template class NRMat<unsigned int>;
|
|
template class NRMat<unsigned long>;
|
|
|