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/* vim: set ts=8 sw=8 sts=8 noexpandtab cindent: */
/*******************************************************************************
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LA : linear algebra C + + interface library
Copyright ( C ) 2008 Jiri Pittner < jiri . pittner @ jh - inst . cas . cz > or < jiri @ pittnerovi . com >
complex versions written by Roman Curik < roman . curik @ jh - inst . cas . cz >
This program is free software : you can redistribute it and / or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation , either version 3 of the License , or
( at your option ) any later version .
This program is distributed in the hope that it will be useful ,
but WITHOUT ANY WARRANTY ; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE . See the
GNU General Public License for more details .
You should have received a copy of the GNU General Public License
along with this program . If not , see < http : //www.gnu.org/licenses/>.
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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# ifndef _LA_MAT_H_
# define _LA_MAT_H_
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# include "la_traits.h"
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using namespace LA_Vecmat3 ;
# include "vecmat3.h"
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namespace LA {
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//forward declaration
template < typename T > class NRPerm ;
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template < typename T , typename R > class WeightPermutation ;
template < typename T , typename R > class PermutationAlgebra ;
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template < typename T > class CyclePerm ;
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template < typename T > class NRMat_from1 ;
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/***************************************************************************/ /**
* \ brief NRMat < T > class template implementing the matrix interface
* @ see NRVec < T > , NRSMat < T >
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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class NRMat {
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protected :
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int nn ; //!< number of rows
int mm ; //!< number of columns
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# ifdef MATPTR
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T * * v ; //!< pointer to the array of pointers pointing to the beginings of individual rows
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# else
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T * v ; //!< pointer to the data stored continuously in emmory
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# endif
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int * count ; //!< reference counter
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public :
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# ifdef CUDALA
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GPUID location ;
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# endif
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friend class NRVec < T > ;
friend class NRSMat < T > ;
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friend class NRMat_from1 < T > ;
friend class NRSMat_from1 < T > ;
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//! standard destructor
~ NRMat ( ) ;
/***************************************************************************/ /**
* \ brief inlined constructor creating zero matrix of general type < code > T < / code >
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
inline NRMat ( ) : nn ( 0 ) , mm ( 0 ) , v ( 0 ) , count ( 0 ) {
# ifdef CUDALA
location = DEFAULT_LOC ;
# endif
} ;
/***************************************************************************/ /**
* \ brief Inlined constructor creating matrix of given size and location .
* Because of performance reasons , no incialization is done .
* @ param [ in ] n vector size ( count of elements )
* @ param [ in ] loc location of the underlying data ( CPU / GPU )
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
inline NRMat ( const int n , const int m , const GPUID loc = undefined ) ;
//! inlined constructor creating matrix of given size filled with prescribed value and stored at given location
inline NRMat ( const T & a , const int n , const int m , const GPUID loc ) ;
//! inlined constructor creating matrix of given size filled with prescribed value
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inline NRMat ( const T & a , const int n , const int m ) ;
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//! inlined constructor creating matrix of given size filled with data located at given memory location
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inline NRMat ( const T * a , const int n , const int m ) ;
inline NRMat ( const Mat3 < T > & rhs ) : NRMat ( & rhs ( 0 , 0 ) , 3 , 3 ) { } ;
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//! inlined constructor creating matrix of given size from an array
template < int R , int C > inline NRMat ( const T ( & a ) [ R ] [ C ] ) ;
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//! inlined copy-constructor
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inline NRMat ( const NRMat & rhs ) ;
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//! complexifying constructor
NRMat ( const typename LA_traits_complex < T > : : NRMat_Noncomplex_type & rhs , bool imagpart = false ) ;
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//! explicit decomplexifying constructor
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explicit NRMat ( const NRMat < std : : complex < T > > & rhs , bool imagpart = false ) ;
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//! explicit constructor converting symmetric matrix stored in packed form into a <code>NRMat<T></code> object
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explicit NRMat ( const NRSMat < T > & rhs ) ;
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//! explicit constructor converting vector into a <code>NRMat<T></code> object
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# ifdef MATPTR
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explicit NRMat ( const NRVec < T > & rhs , const int n , const int m , const int offset = 0 ) : NRMat ( & rhs [ 0 ] [ 0 ] + offset , n , m ) {
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if ( offset < 0 | | ( size_t ) n * m + offset > rhs . nn ) laerror ( " matrix dimensions and offset incompatible with vector length " ) ;
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} ;
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# else
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explicit NRMat ( const NRVec < T > & rhs , const int n , const int m , const int offset = 0 ) ;
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# endif
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# ifdef MATPTR
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const bool operator ! = ( const NRMat & rhs ) const { if ( nn ! = rhs . nn | | mm ! = rhs . mm ) return 1 ; return LA_traits < T > : : gencmp ( v [ 0 ] , rhs . v [ 0 ] , ( size_t ) nn * mm ) ; } //memcmp for scalars else elementwise
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# else
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const bool operator ! = ( const NRMat & rhs ) const { if ( nn ! = rhs . nn | | mm ! = rhs . mm ) return 1 ; return LA_traits < T > : : gencmp ( v , rhs . v , ( size_t ) nn * mm ) ; } //memcmp for scalars else elementwise
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# endif
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const bool operator = = ( const NRMat & rhs ) const { return ! ( * this ! = rhs ) ; } ;
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//! determine the count of references to this object
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inline int getcount ( ) const { return count ? * count : 0 ; }
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//! ensure that the data of this matrix are referenced exactly once
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void copyonwrite ( bool detachonly = false , bool deep = true ) ;
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//! permute matrix elements
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const NRMat permuted_rows ( const NRPerm < int > & p , const bool inverse = false ) const ;
const NRMat permuted_cols ( const NRPerm < int > & p , const bool inverse = false ) const ;
const NRMat permuted_both ( const NRPerm < int > & p , const NRPerm < int > & q , const bool inverse = false ) const ;
void permuteme_rows ( const CyclePerm < int > & p ) ; //in place
void permuteme_cols ( const CyclePerm < int > & p ) ; //in place
void scale_row ( const int i , const T f ) ; //in place
void scale_col ( const int i , const T f ) ; //in place
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void axpy ( const T alpha , const NRPerm < int > & p , const bool direction ) ;
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explicit NRMat ( const NRPerm < int > & p , const bool direction , const bool parity = false ) ; //permutation matrix
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explicit NRMat ( const WeightPermutation < int , T > & p , const bool direction ) ;
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explicit NRMat ( const PermutationAlgebra < int , T > & p , const bool direction , const int nforce = 0 ) ; //note that one cannot represent e.g. young projectors in this way, since the representation of S(n) by permutation matrices is reducible just to two irreps [n] and [n-1,1] since the charater of that RR = number of cycles of length=1
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/***************************************************************************/ /**
* routines for CUDA related stuff
* \ li < code > getlocation ( ) < / code > gets the protected data member location
* \ li < code > moveto ( const GPUID ) < / code > moves underlying data between CPU / GPU memory
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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# ifdef CUDALA
inline GPUID getlocation ( ) const { return location ; }
void moveto ( const GPUID dest ) ;
# else
inline GPUID getlocation ( ) const { return cpu ; }
void moveto ( const GPUID dest ) { } ;
# endif
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//! fill the matrix with pseudorandom numbers (uniform distribution)
void randomize ( const typename LA_traits < T > : : normtype & x ) ;
//! assigment operator performing shallow copy
NRMat & operator = ( const NRMat & rhs ) ;
//! assigment operator performing deep copy
NRMat & operator | = ( const NRMat & rhs ) ;
//! assign scalar value to the diagonal elements
NRMat & operator = ( const T & a ) ;
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//! unit matrix for general power
void identity ( ) { * this = ( T ) 1 ; }
//! inverse matrix
NRMat inverse ( ) ;
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//! add scalar value to the diagonal elements
NRMat & operator + = ( const T & a ) ;
//! subtract scalar value to the diagonal elements
NRMat & operator - = ( const T & a ) ;
//! multiply by a scalar value
NRMat & operator * = ( const T & a ) ;
//! add given matrix
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NRMat & operator + = ( const NRMat & rhs ) ;
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//! subtract given matrix
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NRMat & operator - = ( const NRMat & rhs ) ;
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//! Hadamard element-wise product
NRMat & operator ^ = ( const NRMat < T > & rhs ) ;
//! add symmetric matrix stored in packed form
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NRMat & operator + = ( const NRSMat < T > & rhs ) ;
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//! subtract symmetric matrix stored in packed form
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NRMat & operator - = ( const NRSMat < T > & rhs ) ;
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//! unary minus
const NRMat operator - ( ) const ;
//! add scalar value to all matrix elements and return the result by value
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inline const NRMat operator + ( const T & a ) const ;
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//! subtract scalar value from all matrix elements and return the result by value
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inline const NRMat operator - ( const T & a ) const ;
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//! multiply all matrix elements by a scalar value and return the result by value
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inline const NRMat operator * ( const T & a ) const ;
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//! add given matrix and return the result by value
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inline const NRMat operator + ( const NRMat & rhs ) const ;
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//! add given symmetric matrix stored in packed form and return the result by value
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inline const NRMat operator + ( const NRSMat < T > & rhs ) const ;
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//! subtract given matrix and return the result by value
inline const NRMat operator - ( const NRMat & rhs ) const ;
//! subtract given symmetric matrix stored in packed form and return the result by value
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inline const NRMat operator - ( const NRSMat < T > & rhs ) const ;
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//! multiply by given matrix and return the result by value
const NRMat operator * ( const NRMat & rhs ) const ;
//! multiply by given symmetric matrix stored in packed form and return the result by value
const NRMat operator * ( const NRSMat < T > & rhs ) const ;
//! direct sum of two matrices
const NRMat operator & ( const NRMat & rhs ) const ;
//! direct product of two matrices
const NRMat operator | ( const NRMat < T > & rhs ) const ;
//! multiply by a vector
const NRVec < T > operator * ( const NRVec < T > & rhs ) const {
NRVec < T > result ( nn , rhs . getlocation ( ) ) ;
result . gemv ( ( T ) 0 , * this , ' n ' , ( T ) 1 , rhs ) ;
return result ;
} ;
//! multiply this matrix of general type <code>T</code> by vector of type <code>complex<T></code>
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const NRVec < std : : complex < T > > operator * ( const NRVec < std : : complex < T > > & rhs ) const {
NRVec < std : : complex < T > > result ( nn , rhs . getlocation ( ) ) ;
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result . gemv ( ( T ) 0 , * this , ' n ' , ( T ) 1 , rhs ) ;
return result ;
} ;
//! inner product of two matrices (taking conjugation into account in the complex case)
const T dot ( const NRMat & rhs ) const ;
//! direct sum
const NRMat oplus ( const NRMat & rhs ) const ;
//! direct product
const NRMat otimes ( const NRMat & rhs , bool reversecolumns = false ) const ;
//! multiply by diagonal matrix from left
void diagmultl ( const NRVec < T > & rhs ) ;
//! multiply by diagonal matrix from right
void diagmultr ( const NRVec < T > & rhs ) ;
//! for this matrix \f$A\f$ compute \f$A^\mathrm{T}\cdot{}A\f$
const NRSMat < T > transposedtimes ( ) const ;
//! for this matrix \f$A\f$ compute \f$A\cdot{}A^\mathrm{T}\f$
const NRSMat < T > timestransposed ( ) const ;
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//! sum numbers in the rows (sum over column index)
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const NRVec < T > rsum ( ) const ;
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//! sum numbers in the columns (sum over row index)
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const NRVec < T > csum ( ) const ;
//! orthonormalize this matrix
void orthonormalize ( const bool rowcol , const NRSMat < T > * metric = NULL ) ;
//! get the i<sup>th</sup> row
const NRVec < T > row ( const int i , int l = - 1 ) const ;
//! get the j<sup>th</sup> column
const NRVec < T > column ( const int j , int l = - 1 ) const {
NOT_GPU ( * this ) ;
if ( l < 0 ) l = nn ;
NRVec < T > r ( l ) ;
for ( register int i = 0 ; i < l ; + + i ) r [ i ] = ( * this ) ( i , j ) ;
return r ;
} ;
//! extract the digonal elements of this matrix and store them into a vector
const T * diagonalof ( NRVec < T > & , const bool divide = 0 , bool cache = false ) const ;
//! set diagonal elements
void diagonalset ( const NRVec < T > & ) ;
//! perform the <b>gemv</b> operation with vector of type <code>T</code>
void gemv ( const T beta , NRVec < T > & r , const char trans , const T alpha , const NRVec < T > & x ) const { r . gemv ( beta , * this , trans , alpha , x ) ; } ;
//! perform the <b>gemv</b> operation with vector of type <code>complex<T></code>
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void gemv ( const T beta , NRVec < std : : complex < T > > & r , const char trans , const T alpha , const NRVec < std : : complex < T > > & x ) const { r . gemv ( beta , * this , trans , alpha , x ) ; } ;
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//! determine the pointer to the i<sup>th</sup> row
inline T * operator [ ] ( const int i ) ;
//! determine the const pointer to the i<sup>th</sup> row
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inline const T * operator [ ] ( const int i ) const ;
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//! get the reference to the element with indices (i,j)
inline T & operator ( ) ( const int i , const int j ) ;
//! get the const reference to the element with indices (i,j)
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inline const T & operator ( ) ( const int i , const int j ) const ;
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//! get the copy of the element with indices (i,j)
inline const T get_ij ( const int i , const int j ) const ;
//! get the number of rows
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inline int nrows ( ) const ;
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//! get the number of columns
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inline int ncols ( ) const ;
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//! get the number of matrix elements
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inline size_t size ( ) const ;
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//! unformatted input
void get ( int fd , bool dimensions = 1 , bool transposed = false ) ;
//! unformatted output
void put ( int fd , bool dimensions = 1 , bool transposed = false ) const ;
//! formatted output
void fprintf ( FILE * f , const char * format , const int modulo ) const ;
//! formatted input
void fscanf ( FILE * f , const char * format ) ;
//! set all matrix elements equal to zero
void clear ( ) {
if ( nn & & mm ) {
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copyonwrite ( LA_traits < T > : : is_plaindata ( ) ) ;
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LA_traits < T > : : clear ( ( * this ) [ 0 ] , ( size_t ) nn * mm ) ;
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}
} ;
//! resize the matrix
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void resize ( int n , int m ) ;
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//! deallocate the matrix
void dealloc ( void ) { resize ( 0 , 0 ) ; }
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//! get the pointer to the data
inline operator T * ( ) ;
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//! get the const pointer to the data
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inline operator const T * ( ) const ;
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//! in case of square matrix, transpose the leading minor of order <code>n</code>
NRMat & transposeme ( const int n = 0 ) ;
//! conjugate a square matrix
NRMat & conjugateme ( ) ;
//! transpose this matrix and return the result by value
const NRMat transpose ( bool conj = false ) const ;
//! conjugate this matrix and return the result by value
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const NRMat conjugate ( ) const { NRMat r ( * this ) ; r . conjugateme ( ) ; return r ; } ;
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//! extract specified submatrix
const NRMat submatrix ( const int fromrow , const int torow , const int fromcol , const int tocol ) const ;
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const NRMat submatrix ( const NRVec < int > & rows , const NRVec < int > & cols ) const ;
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//! store given matrix at given position into the current matrix
void storesubmatrix ( const int fromrow , const int fromcol , const NRMat & rhs ) ;
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void storesubmatrix ( const NRVec < int > & rows , const NRVec < int > & cols , const NRMat & rhs ) ;
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//! perform the \b gemm operation
void gemm ( const T & beta , const NRMat & a , const char transa , const NRMat & b , const char transb , const T & alpha ) ;
//! compute the norm of this matrix
const typename LA_traits < T > : : normtype norm ( const T scalar = ( T ) 0 ) const ;
//! add up a scalar multiple of given matrix to the current matrix
void axpy ( const T alpha , const NRMat & x ) ;
//! maximal element in the absolute value
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inline const T amax ( ) const ;
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//! minimal element in the absolute value
inline const T amin ( ) const ;
//! determine the sum of the diagonal elements
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const T trace ( ) const ;
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//! swap the order of the rows of the current matrix
NRMat & swap_rows ( ) ;
//! swap the order of the columns of the current matrix
NRMat & swap_cols ( ) ;
//! swap the order of the rows and columns of the current matrix
NRMat & swap_rows_cols ( ) ;
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// LV - swapping of columns i and j
NRMat & swap_cols ( const int i , const int j ) ;
// LV - swapping of rows i and j
NRMat & swap_rows ( const int i , const int j ) ;
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//rotate rows or columns through an angle
NRMat & rotate_cols ( const int i , const int j , const T phi ) ;
NRMat & rotate_rows ( const int i , const int j , const T phi ) ;
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//! multiply by sparse matrix
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SparseSMat < T > operator * ( const SparseSMat < T > & rhs ) const ;
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//! explicit constructor converting sparse matrix into \c NRMat<T> object
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explicit NRMat ( const SparseMat < T > & rhs ) ; // dense from sparse
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//! explicit constructor converting sparse symmetric matrix into \c NRMat<T> object
explicit NRMat ( const SparseSMat < T > & rhs ) ;
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//! explicit constructor converting sparse CSR matrix into \c NRMat<T> object
explicit NRMat ( const CSRMat < T > & rhs ) ;
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//! add up given sparse matrix
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NRMat & operator + = ( const SparseMat < T > & rhs ) ;
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//! subtract given sparse matrix
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NRMat & operator - = ( const SparseMat < T > & rhs ) ;
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//! perform the \b gemm operation
void gemm ( const T & beta , const SparseMat < T > & a , const char transa , const NRMat & b , const char transb , const T & alpha ) ;
inline void simplify ( ) { } ;
bool issymmetric ( ) const { return 0 ; } ;
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const typename LA_traits < T > : : normtype nonsymmetry ( ) const ;
const typename LA_traits < T > : : normtype nonhermiticity ( ) const ;
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# ifndef NO_STRASSEN
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//! Strassen's multiplication (better than \f$\mathacal{O}(n^3)\f$, analogous syntax to \see NRMat<T>::gemm() )
void strassen ( const T beta , const NRMat & a , const char transa , const NRMat & b , const char transb , const T alpha ) ;
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void s_cutoff ( const int , const int , const int , const int ) const ;
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# endif
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void swap ( NRMat & rhs ) //more efficient swap than via tmp and constructors and operator=
{
int tmpnn = nn ; nn = rhs . nn ; rhs . nn = tmpnn ;
int tmpmm = mm ; mm = rhs . mm ; rhs . mm = tmpmm ;
# ifdef MATPTR
T * *
# else
T *
# endif
tmpv = v ; v = rhs . v ; rhs . v = tmpv ;
int * tmpcount = count ; count = rhs . count ; rhs . count = tmpcount ;
# ifdef CUDALA
GPUID tmplocation = location ; location = rhs . location ; rhs . location = tmplocation ;
# endif
}
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NRMat < typename LA_traits < T > : : normtype > abs ( ) const ; //elementwise absolute values
NRMat < typename LA_traits < T > : : normtype > diffabs ( const NRMat & rhs ) const ; //difference of absolute values
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} ;
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} //namespace
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//due to mutual includes this has to be after full class declaration
# include "vec.h"
# include "smat.h"
# include "sparsemat.h"
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# include "sparsesmat.h"
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# include "permutation.h"
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namespace LA {
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/***************************************************************************/ /**
* matrix constructor
* @ param [ in ] n number of rows of the matrix being created
* @ param [ in ] m number of cols of the matrix being created
* @ param [ in ] loc location for storing the matrix
* @ see count , v , location
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > : : NRMat ( const int n , const int m , const GPUID loc ) : nn ( n ) , mm ( m ) , count ( new int ) {
T * p ;
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* count = 1 ;
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const size_t nm = ( size_t ) n * m ;
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# ifdef CUDALA
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location = ( loc = = undefined ? DEFAULT_LOC : loc ) ;
if ( location = = cpu ) {
# endif
# ifdef MATPTR
v = new T * [ n ] ;
p = v [ 0 ] = new T [ nm ] ;
for ( int i = 1 ; i < n ; i + + ) v [ i ] = v [ i - 1 ] + m ;
# else
p = v = new T [ nm ] ;
# endif
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# ifdef CUDALA
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} else {
const T val = 0 ;
v = ( T * ) gpualloc ( nm * sizeof ( T ) ) ;
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}
# endif
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}
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/***************************************************************************/ /**
* matrix constructor
* @ param [ in ] a value of type T intended for matrix inicialization
* @ param [ in ] n number of rows of the matrix being created
* @ param [ in ] m number of cols of the matrix being created
* @ see count , v
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > : : NRMat ( const T & a , const int n , const int m , const GPUID loc ) : nn ( n ) , mm ( m ) , count ( new int ) {
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const size_t nm = ( size_t ) n * m ;
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T * p ;
* count = 1 ;
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# ifdef CUDALA
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location = ( loc = = undefined ? DEFAULT_LOC : loc ) ;
if ( location = = cpu ) {
# endif
# ifdef MATPTR
v = new T * [ n ] ;
p = v [ 0 ] = new T [ nm ] ;
for ( register int i = 1 ; i < n ; i + + ) v [ i ] = v [ i - 1 ] + m ;
# else
p = v = new T [ nm ] ;
# endif
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if ( ! LA_traits < T > : : is_plaindata ( ) | | a ! = ( T ) 0 ) {
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for ( register int i = 0 ; i < nm ; i + + ) * p + + = a ;
} else {
memset ( p , 0 , nm * sizeof ( T ) ) ;
}
# ifdef CUDALA
} else {
if ( sizeof ( T ) % sizeof ( float ) ! = 0 ) laerror ( " memory alignment error " ) ;
v = ( T * ) gpualloc ( nm * sizeof ( T ) ) ;
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if ( ! LA_traits < T > : : is_plaindata ( ) ) laerror ( " only implemented for plain data " ) ;
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smart_gpu_set ( nm , a , v ) ;
}
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# endif
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}
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/***************************************************************************/ /**
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* inline constructor creating matrix from an array
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
template < typename T > template < int R , int C >
inline NRMat < T > : : NRMat ( const T ( & a ) [ R ] [ C ] ) : count ( new int ) {
nn = R ;
mm = C ;
* count = 1 ;
# ifdef CUDALA
if ( location = = cpu ) {
# endif
# ifdef MATPTR
v = new T * [ nn ] ;
v [ 0 ] = new T [ nn * mm ] ;
for ( register int i = 1 ; i < n ; i + + ) v [ i ] = v [ i - 1 ] + m ;
if ( LA_traits < T > : : is_plaindata ( ) ) memcpy ( v [ 0 ] , a , nn * mm * sizeof ( T ) ) ;
else for ( int i = 0 ; i < nn ; i + + ) for ( int j = 0 ; j < mm ; + + j ) v [ i ] [ j ] = a [ i ] [ j ] ;
# else
v = new T [ nn * mm ] ;
if ( LA_traits < T > : : is_plaindata ( ) ) memcpy ( v , a , nn * mm * sizeof ( T ) ) ;
else for ( int i = 0 ; i < nn ; i + + ) for ( int j = 0 ; j < mm ; + + j ) v [ i * mm + j ] = a [ i ] [ j ] ;
# endif
# ifdef CUDALA
} else {
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if ( ! LA_traits < T > : : is_plaindata ( ) ) laerror ( " only implemented for plain data " ) ;
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v = ( T * ) gpualloc ( nn * mm * sizeof ( T ) ) ;
cublasSetVector ( nm , sizeof ( T ) , a , 1 , v , 1 ) ;
}
# endif
}
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/***************************************************************************/ /**
* matrix constructor
* @ param [ in ] a value of type T intended for matrix inicialization
* @ param [ in ] n number of rows of the matrix being created
* @ param [ in ] m number of cols of the matrix being created
* @ see count , v
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
template < typename T >
NRMat < T > : : NRMat ( const T & a , const int n , const int m ) : nn ( n ) , mm ( m ) , count ( new int ) {
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const size_t nm = ( size_t ) n * m ;
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T * p ;
* count = 1 ;
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# ifdef CUDALA
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location = DEFAULT_LOC ;
if ( location = = cpu ) {
# endif
# ifdef MATPTR
v = new T * [ n ] ;
p = v [ 0 ] = new T [ nm ] ;
for ( register int i = 1 ; i < n ; i + + ) v [ i ] = v [ i - 1 ] + m ;
# else
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p = v = new T [ nm ] ;
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# endif
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if ( ! LA_traits < T > : : is_plaindata ( ) | | a ! = ( T ) 0 )
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for ( register int i = 0 ; i < nm ; i + + ) * p + + = a ;
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else
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memset ( p , 0 , nm * sizeof ( T ) ) ;
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# ifdef CUDALA
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} else {
v = ( T * ) gpualloc ( nm * sizeof ( T ) ) ;
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if ( ! LA_traits < T > : : is_plaindata ( ) ) laerror ( " only implemented for plain data " ) ;
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smart_gpu_set ( nm , a , v ) ;
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}
# endif
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}
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/***************************************************************************/ /**
* matrix constructor
* @ param [ in ] a pointer to values of type T intended for matrix inicialization
* @ param [ in ] n number of rows of the matrix being created
* @ param [ in ] m number of cols of the matrix being created
* @ see count , v
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > : : NRMat ( const T * a , const int n , const int m ) : nn ( n ) , mm ( m ) , count ( new int ) {
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const size_t nm = ( size_t ) n * m ;
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# ifdef CUDALA
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location = DEFAULT_LOC ;
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# endif
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* count = 1 ;
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# ifdef CUDALA
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if ( location = = cpu ) {
# endif
# ifdef MATPTR
v = new T * [ n ] ;
v [ 0 ] = new T [ nm ] ;
for ( register int i = 1 ; i < n ; i + + ) v [ i ] = v [ i - 1 ] + m ;
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if ( LA_traits < T > : : is_plaindata ( ) ) memcpy ( v [ 0 ] , a , nm * sizeof ( T ) ) ;
else for ( int i = 0 ; i < nm ; + + i ) v [ 0 ] [ i ] = a [ i ] ;
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# else
v = new T [ nm ] ;
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if ( LA_traits < T > : : is_plaindata ( ) ) memcpy ( v , a , nm * sizeof ( T ) ) ;
else for ( int i = 0 ; i < nm ; + + i ) v [ i ] = a [ i ] ;
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# endif
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# ifdef CUDALA
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} else {
v = ( T * ) gpualloc ( nm * sizeof ( T ) ) ;
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if ( ! LA_traits < T > : : is_plaindata ( ) ) laerror ( " only implemented for plain data " ) ;
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cublasSetVector ( nm , sizeof ( T ) , a , 1 , v , 1 ) ;
}
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# endif
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}
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/***************************************************************************/ /**
* copy constructor implementing shallow copy
* @ param [ in ] rhs reference object to be copied
* @ see count , v
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > : : NRMat ( const NRMat & rhs ) {
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# ifdef CUDALA
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location = rhs . location ;
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# endif
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nn = rhs . nn ;
mm = rhs . mm ;
count = rhs . count ;
v = rhs . v ;
if ( count ) + + ( * count ) ;
}
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/***************************************************************************/ /**
* create matrix from a \ c NRSMat object
* @ param [ in ] rhs \ c NRSMat input object to be converted
* @ see count , v , vec . h , NRSMat < T >
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > : : NRMat ( const NRSMat < T > & rhs ) {
NOT_GPU ( rhs ) ;
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# ifdef CUDALA
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location = rhs . location ;
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# endif
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int i ( 0 ) , j ( 0 ) , k ( 0 ) ;
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nn = mm = rhs . nrows ( ) ;
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count = new int ;
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* count = 1 ;
# ifdef MATPTR
v = new T * [ nn ] ;
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v [ 0 ] = new T [ ( size_t ) mm * nn ] ;
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for ( int i = 1 ; i < nn ; i + + ) v [ i ] = v [ i - 1 ] + mm ;
# else
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v = new T [ ( size_t ) mm * nn ] ;
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# endif
# ifdef MATPTR
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for ( i = 0 ; i < nn ; i + + ) {
for ( j = 0 ; j < = i ; j + + ) {
v [ i ] [ j ] = v [ j ] [ i ] = rhs [ k + + ] ;
}
}
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# else
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for ( i = 0 ; i < nn ; i + + ) {
for ( j = 0 ; j < = i ; j + + ) {
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v [ i * ( size_t ) nn + j ] = v [ j * ( size_t ) nn + i ] = rhs [ k + + ] ;
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}
}
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# endif
}
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/***************************************************************************/ /**
* create matrix from a vector ( shallow copy )
* @ param [ in ] rhs NRVec vector containing the data
* @ param [ in ] n number of rows of the matrix being created
* @ param [ in ] m number of cols of the matrix being created
* @ see count , v , vec . h
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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# ifndef MATPTR
template < typename T >
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NRMat < T > : : NRMat ( const NRVec < T > & rhs , const int n , const int m , const int offset )
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{
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if ( offset < 0 | | ( size_t ) n * m + offset > rhs . nn ) laerror ( " matrix dimensions and offset incompatible with vector length " ) ;
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if ( offset ! = 0 ) std : : cout < < " dangerous: if the underlying vector is deallocated before the matrix, wrong delete[] will result for nonzero offset!!! \n " ;
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# ifdef CUDALA
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location = rhs . location ;
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# endif
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nn = n ;
mm = m ;
count = rhs . count ;
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v = rhs . v + offset ; //!< make just shallow copy
( * count ) + + ; //!< therefore increase the reference counter
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}
# endif
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/***************************************************************************/ /**
* \ c NRMat + \ c NRSmat via operator + =
* @ param [ in ] rhs NRSMat matrix to be subtracted from current matrix
* @ return result of the subtraction
* @ see NRMat < T > : : operator + = ( const NRSMat < T > & )
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline const NRMat < T > NRMat < T > : : operator + ( const NRSMat < T > & rhs ) const {
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return NRMat < T > ( * this ) + = rhs ;
}
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/***************************************************************************/ /**
* \ c NRMat - \ c NRSmat via operator - =
* @ param [ in ] rhs NRSMat matrix to be subtracted from current matrix
* @ return result of the subtraction
* @ see NRMat < T > : : operator - = ( const NRSMat < T > & )
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline const NRMat < T > NRMat < T > : : operator - ( const NRSMat < T > & rhs ) const {
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return NRMat < T > ( * this ) - = rhs ;
}
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/***************************************************************************/ /**
* @ param [ in ] i row number
* @ return pointer to the first element in the i - th row
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline T * NRMat < T > : : operator [ ] ( const int i ) {
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# ifdef DEBUG
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if ( _LA_count_check & & * count ! = 1 ) laerror ( " matrix with *count>1 used as l-value " ) ;
if ( i < 0 | | i > = nn ) laerror ( " Mat [] out of range " ) ;
if ( ! v ) laerror ( " unallocated matrix " ) ;
# endif
# ifdef MATPTR
return v [ i ] ;
# else
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return v + i * ( size_t ) mm ;
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# endif
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}
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/***************************************************************************/ /**
* @ param [ in ] i row number
* @ return const pointer to the first element in the i - th row
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline const T * NRMat < T > : : operator [ ] ( const int i ) const {
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# ifdef DEBUG
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if ( i < 0 | | i > = nn ) laerror ( " index out of range " ) ;
if ( ! v ) laerror ( " unallocated matrix " ) ;
# endif
NOT_GPU ( * this ) ;
# ifdef MATPTR
return v [ i ] ;
# else
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return v + i * ( size_t ) mm ;
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# endif
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}
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/***************************************************************************/ /**
* for a given matrix \ f $ A \ f $ , determine the element with indices ( i , j )
* @ param [ in ] i row number
* @ param [ in ] j col number
* @ return reference to \ f $ A_ { i , j } \ f $
* @ see NRMat < T > : : count
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline T & NRMat < T > : : operator ( ) ( const int i , const int j ) {
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# ifdef DEBUG
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if ( _LA_count_check & & * count ! = 1 ) laerror ( " NRMat::operator(,) used as l-value for a matrix with count > 1 " ) ;
if ( i < 0 | | i > = nn & & nn > 0 | | j < 0 | | j > = mm & & mm > 0 ) laerror ( " index out of range " ) ;
if ( ! v ) laerror ( " unallocated matrix " ) ;
# endif
NOT_GPU ( * this ) ;
# ifdef MATPTR
return v [ i ] [ j ] ;
# else
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return v [ i * ( size_t ) mm + j ] ;
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# endif
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}
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/***************************************************************************/ /**
* for a given matrix \ f $ A \ f $ , determine the element with indices ( i , j )
* @ param [ in ] i row number
* @ param [ in ] j col number
* @ return const reference to \ f $ A_ { i , j } \ f $
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline const T & NRMat < T > : : operator ( ) ( const int i , const int j ) const {
T ret ;
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# ifdef DEBUG
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if ( i < 0 | | i > = nn & & nn > 0 | | j < 0 | | j > = mm & & mm > 0 ) laerror ( " index out of range " ) ;
if ( ! v ) laerror ( " unallocated matrix " ) ;
# endif
NOT_GPU ( * this ) ;
# ifdef MATPTR
return v [ i ] [ j ] ;
# else
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return v [ i * ( size_t ) mm + j ] ;
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# endif
}
/***************************************************************************/ /**
* for a given matrix \ f $ A \ f $ , determine the element with indices ( i , j )
* @ param [ in ] i row number
* @ param [ in ] j col number
* @ return const reference to \ f $ A_ { i , j } \ f $
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
template < typename T >
inline const T NRMat < T > : : get_ij ( const int i , const int j ) const {
T ret ;
# ifdef DEBUG
if ( i < 0 | | i > = nn | | j < 0 | | j > = mm ) laerror ( " index out of range " ) ;
if ( ! v ) laerror ( " unallocated matrix " ) ;
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# endif
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# ifdef CUDALA
if ( location = = cpu ) {
# endif
# ifdef MATPTR
return v [ i ] [ j ] ;
# else
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return v [ i * ( size_t ) mm + j ] ;
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# endif
# ifdef CUDALA
} else {
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const size_t pozice = i * ( size_t ) mm + j ;
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gpuget ( 1 , sizeof ( T ) , v + pozice , & ret ) ;
return ret ;
}
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# endif
}
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/***************************************************************************/ /**
* @ return number of rows
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline int NRMat < T > : : nrows ( ) const {
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return nn ;
}
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/***************************************************************************/ /**
* @ return number of columns
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline int NRMat < T > : : ncols ( ) const {
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return mm ;
}
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/***************************************************************************/ /**
* @ return number of elements
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline size_t NRMat < T > : : size ( ) const {
return ( size_t ) nn * mm ;
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}
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/***************************************************************************/ /**
* @ return pointer of general type T to the underlying data structure
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline NRMat < T > : : operator T * ( ) {
# ifdef DEBUG
if ( ! v ) laerror ( " unallocated matrix " ) ;
# endif
# ifdef MATPTR
return v [ 0 ] ;
# else
return v ;
# endif
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}
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/***************************************************************************/ /**
* @ return const pointer of general type T to the underlying data
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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inline NRMat < T > : : operator const T * ( ) const {
# ifdef DEBUG
if ( ! v ) laerror ( " unallocated matrix " ) ;
# endif
# ifdef MATPTR
return v [ 0 ] ;
# else
return v ;
# endif
}
/***************************************************************************/ /**
* for this real matrix \ f $ A \ f $ , determine the first element
* with largest absolute value
* @ return \ f $ A_ { l , m } \ f $ which maximizes \ f $ \ left | A_ { i , j } \ right | \ f $
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
template < >
inline const double NRMat < double > : : amax ( ) const {
# ifdef CUDALA
if ( location = = cpu ) {
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# endif
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# ifdef MATPTR
return v [ 0 ] [ cblas_idamax ( nn * mm , v [ 0 ] , 1 ) - 1 ] ;
# else
return v [ cblas_idamax ( nn * mm , v , 1 ) - 1 ] ;
# endif
# ifdef CUDALA
} else {
double ret ( 0.0 ) ;
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const size_t pozice = cublasIdamax ( ( size_t ) nn * mm , v , 1 ) - 1 ;
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TEST_CUBLAS ( " cublasIdamax " ) ;
gpuget ( 1 , sizeof ( double ) , v + pozice , & ret ) ;
return ret ;
}
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# endif
}
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/***************************************************************************/ /**
* for this real matrix \ f $ A \ f $ , determine the first element
* with smallest absolute value
* @ return \ f $ A_ { l , m } \ f $ which minimizes \ f $ \ left | A_ { i , j } \ right | \ f $
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < >
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inline const double NRMat < double > : : amin ( ) const {
double ret ( 0.0 ) ;
# ifdef CUDALA
if ( location = = cpu ) {
# endif
// idamin seems not to be supported
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const size_t nm = ( size_t ) nn * mm ;
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double val ( 0.0 ) ;
int index ( - 1 ) ;
ret = std : : numeric_limits < double > : : max ( ) ;
for ( register int i = 0 ; i < nm ; i + + ) {
# ifdef MATPTR
val = std : : abs ( v [ 0 ] [ i ] ) ;
# else
val = std : : abs ( v [ i ] ) ;
# endif
if ( val < ret ) { index = i ; ret = val ; }
}
# ifdef MATPTR
ret = v [ 0 ] [ index ] ;
# else
ret = v [ index ] ;
# endif
# ifdef CUDALA
} else {
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const size_t pozice = cublasIdamin ( ( size_t ) nn * mm , v , 1 ) - 1 ;
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TEST_CUBLAS ( " cublasIdamin " ) ;
gpuget ( 1 , sizeof ( double ) , v + pozice , & ret ) ;
}
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# endif
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return ret ;
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}
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/***************************************************************************/ /**
* for this complex matrix \ f $ A \ f $ , determine the smallest index of the maximum
* magnitude element , i . e . maximal element in the 1 - norm
* @ return \ f $ A_ { l , m } \ f $ which maximizes \ f $ \ left \ { \ left | \ Re { } A_ { i , j } \ right | + \ left | \ Im { } A_ { i , j } \ right | \ right } \ f $
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < >
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inline const std : : complex < double > NRMat < std : : complex < double > > : : amax ( ) const {
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# ifdef CUDALA
if ( location = = cpu ) {
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# endif
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# ifdef MATPTR
return v [ 0 ] [ cblas_izamax ( nn * mm , v [ 0 ] , 1 ) - 1 ] ;
# else
return v [ cblas_izamax ( nn * mm , v , 1 ) - 1 ] ;
# endif
# ifdef CUDALA
} else {
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std : : complex < double > ret ( 0.0 , 0.0 ) ;
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const size_t pozice = cublasIzamax ( ( size_t ) nn * mm , ( cuDoubleComplex * ) v , 1 ) - 1 ;
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TEST_CUBLAS ( " cublasIzamax " ) ;
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gpuget ( 1 , sizeof ( std : : complex < double > ) , v + pozice , & ret ) ;
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return ret ;
}
# endif
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}
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/***************************************************************************/ /**
* for this complex matrix \ f $ A \ f $ , determine the smallest index of the minimum
* magnitude element , i . e . minimal element in the 1 - norm
* @ return \ f $ A_ { l , m } \ f $ which minimizes \ f $ \ left \ { \ left | \ Re { } A_ { i , j } \ right | + \ left | \ Im { } A_ { i , j } \ right | \ right } \ f $
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
template < >
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inline const std : : complex < double > NRMat < std : : complex < double > > : : amin ( ) const {
std : : complex < double > ret ( 0.0 , 0.0 ) ;
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# ifdef CUDALA
if ( location = = cpu ) {
# endif
// idamin seems not to be supported
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const size_t nm = ( size_t ) nn * mm ;
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int index ( - 1 ) ;
double val ( 0.0 ) , min_val ( 0.0 ) ;
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std : : complex < double > z_val ( 0.0 , 0.0 ) ;
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min_val = std : : numeric_limits < double > : : max ( ) ;
for ( register int i = 0 ; i < nm ; i + + ) {
# ifdef MATPTR
z_val = v [ 0 ] [ i ] ;
# else
z_val = v [ i ] ;
# endif
val = std : : abs ( z_val . real ( ) ) + std : : abs ( z_val . imag ( ) ) ;
if ( val < min_val ) { index = i ; min_val = val ; }
}
# ifdef MATPTR
ret = v [ 0 ] [ index ] ;
# else
ret = v [ index ] ;
# endif
# ifdef CUDALA
} else {
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const size_t pozice = cublasIzamin ( ( size_t ) nn * mm , ( cuDoubleComplex * ) v , 1 ) - 1 ;
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TEST_CUBLAS ( " cublasIzamin " ) ;
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gpuget ( 1 , sizeof ( std : : complex < double > ) , v + pozice , & ret ) ;
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}
# endif
return ret ;
}
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/***************************************************************************/ /**
* destructor for general type
* @ see NRMat < T > : : count
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > : : ~ NRMat ( ) {
if ( ! count ) return ;
if ( - - ( * count ) < = 0 ) {
if ( v ) {
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# ifdef CUDALA
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if ( location = = cpu ) {
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# endif
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# ifdef MATPTR
delete [ ] ( v [ 0 ] ) ;
# endif
delete [ ] v ;
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# ifdef CUDALA
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} else {
gpufree ( v ) ;
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}
# endif
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}
delete count ;
}
}
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/***************************************************************************/ /**
* assigment operator for general type between NRMat and NRMat
* @ see count
* @ return reference to the newly assigned matrix
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > & NRMat < T > : : operator = ( const NRMat < T > & rhs ) {
if ( this ! = & rhs ) {
if ( count ) {
if ( - - ( * count ) = = 0 ) {
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# ifdef CUDALA
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if ( location = = cpu ) {
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# endif
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# ifdef MATPTR
delete [ ] ( v [ 0 ] ) ;
# endif
delete [ ] v ;
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# ifdef CUDALA
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} else { gpufree ( v ) ; }
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# endif
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delete count ;
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}
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}
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v = rhs . v ;
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# ifdef CUDALA
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location = rhs . location ;
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# endif
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nn = rhs . nn ;
mm = rhs . mm ;
count = rhs . count ;
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if ( count ) ( * count ) + + ;
}
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return * this ;
}
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/***************************************************************************/ /**
* perform an explicit deep copy of \ c NRMat object
* @ see count
* @ return reference to the newly copied matrix
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > & NRMat < T > : : operator | = ( const NRMat < T > & rhs ) {
if ( this = = & rhs ) return * this ; // test to avoid self-assignment
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* this = rhs ;
this - > copyonwrite ( ) ;
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return * this ;
}
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/***************************************************************************/ /**
* create own deep copy
* @ see NRMat < T > : : count , NRMat < T > : : operator | = ( )
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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void NRMat < T > : : copyonwrite ( bool detachonly , bool deep ) {
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if ( ! count )
{
if ( nn | | mm ) laerror ( " nonempty matrix without reference count encountered " ) ;
if ( _LA_warn_empty_copyonwrite ) std : : cout < < " Warning: copyonwrite of empty matrix \n " ;
return ;
}
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if ( * count = = 1 & & ! LA_traits < T > : : is_plaindata ( ) & & ! detachonly & & deep ) //type-nested copyonwrite
{
# ifdef CUDALA
if ( location ! = cpu ) laerror ( " nested types not supported on gpu memory " ) ;
# endif
for ( int i = 0 ; i < nn * mm ; + + i ) LA_traits < T > : : copyonwrite ( v [ i ] ) ;
}
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if ( * count > 1 ) {
( * count ) - - ;
count = new int ;
* count = 1 ;
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# ifdef CUDALA
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if ( location = = cpu ) { //matrix is in CPU memory
# endif
# ifdef MATPTR
T * * newv = new T * [ nn ] ;
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newv [ 0 ] = new T [ ( size_t ) mm * nn ] ;
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if ( ! detachonly )
{
if ( LA_traits < T > : : is_plaindata ( ) ) memcpy ( newv [ 0 ] , v [ 0 ] , ( size_t ) mm * nn * sizeof ( T ) ) ;
else
{
for ( int i = 0 ; i < nn * mm ; + + i ) { newv [ i ] = v [ i ] ; LA_traits < T > : : copyonwrite ( newv [ i ] ) ; }
}
}
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v = newv ;
for ( register int i = 1 ; i < nn ; i + + ) v [ i ] = v [ i - 1 ] + mm ;
# else
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T * newv = new T [ ( size_t ) mm * nn ] ;
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if ( ! detachonly )
{
if ( LA_traits < T > : : is_plaindata ( ) ) memcpy ( newv , v , ( size_t ) mm * nn * sizeof ( T ) ) ;
else
{
for ( int i = 0 ; i < nn * mm ; + + i ) { newv [ i ] = v [ i ] ; LA_traits < T > : : copyonwrite ( newv [ i ] ) ; }
}
}
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v = newv ;
# endif
# ifdef CUDALA
} else { //matrix is in GPU memory
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if ( ! LA_traits < T > : : is_plaindata ( ) ) laerror ( " nested types not supported on gpu memory " ) ;
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T * newv = ( T * ) gpualloc ( ( size_t ) mm * nn * sizeof ( T ) ) ;
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if ( sizeof ( T ) % sizeof ( float ) ! = 0 ) laerror ( " cpu memcpy alignment problem " ) ;
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if ( ! detachonly ) cublasScopy ( nn * mm * sizeof ( T ) / sizeof ( float ) , ( const float * ) v , 1 , ( float * ) newv , 1 ) ;
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TEST_CUBLAS ( " cublasScopy " ) ;
v = newv ;
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}
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# endif
}
}
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/***************************************************************************/ /**
* resize given matrix
* @ param [ in ] n number of rows
* @ param [ in ] m number of cols
* @ see count , NRMat < T > : : copyonwrite ( ) , NRMat < T > : : operator | = ( )
* @ return reference to the newly copied matrix
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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//NOTE it must not be used in constructors when the data were not initialized yet
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template < typename T >
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void NRMat < T > : : resize ( int n , int m ) {
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# ifdef DEBUG
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if ( n < 0 | | m < 0 ) laerror ( " illegal dimensions " ) ;
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# endif
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//allow trivial dimensions
if ( n = = 0 | | m = = 0 ) m = n = 0 ;
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if ( count ) {
if ( n = = 0 & & m = = 0 ) {
if ( - - ( * count ) < = 0 ) {
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# ifdef CUDALA
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if ( location = = cpu ) {
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# endif
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# ifdef MATPTR
if ( v ) delete [ ] ( v [ 0 ] ) ;
# endif
if ( v ) delete [ ] v ;
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# ifdef CUDALA
}
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else { gpufree ( v ) ; }
# endif
delete count ;
}
count = 0 ;
nn = mm = 0 ;
v = 0 ;
return ;
}
/*
if we have more than one reference to this matrix , set count to NULL
in order to reach the if - branch below where new memory resources are allocated
*/
if ( * count > 1 ) {
( * count ) - - ;
count = 0 ;
nn = mm = 0 ;
v = 0 ;
}
}
if ( ! count ) {
count = new int ;
* count = 1 ;
nn = n ;
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mm = m ;
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# ifdef CUDALA
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if ( location = = cpu ) {
# endif
# ifdef MATPTR
v = new T * [ nn ] ;
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v [ 0 ] = new T [ ( size_t ) m * n ] ;
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for ( register int i = 1 ; i < n ; i + + ) v [ i ] = v [ i - 1 ] + m ;
# else
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v = new T [ ( size_t ) m * n ] ;
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# endif
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# ifdef CUDALA
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} else {
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v = ( T * ) gpualloc ( ( size_t ) n * m * sizeof ( T ) ) ;
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}
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# endif
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return ;
}
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// at this point *count = 1, check if resize is necessary
if ( n ! = nn | | m ! = mm ) {
nn = n ;
mm = m ;
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# ifdef CUDALA
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if ( location = = cpu ) {
# endif
# ifdef MATPTR
delete [ ] ( v [ 0 ] ) ;
# endif
delete [ ] v ;
# ifdef MATPTR
v = new T * [ nn ] ;
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v [ 0 ] = new T [ ( size_t ) m * n ] ;
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for ( int i = 1 ; i < n ; i + + ) v [ i ] = v [ i - 1 ] + m ;
# else
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v = new T [ ( size_t ) m * n ] ;
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# endif
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# ifdef CUDALA
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} else {
gpufree ( v ) ;
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v = ( T * ) gpualloc ( ( size_t ) n * m * sizeof ( T ) ) ;
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}
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# endif
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}
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}
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/***************************************************************************/ /**
* complexify a given matrix \ f $ A \ f $
* @ param [ in ] rhs matrix \ f $ A \ f $ intended for this operation
* @ return matrix \ f $ B \ f $ where \ f $ \ Re B = A \ f $ and \ f $ \ Im B = 0 \ f $
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < std : : complex < T > > complexify ( const NRMat < T > & rhs ) {
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NOT_GPU ( rhs ) ;
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NRMat < std : : complex < T > > r ( rhs . nrows ( ) , rhs . ncols ( ) , rhs . getlocation ( ) ) ;
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for ( register int i = 0 ; i < rhs . nrows ( ) ; + + i ) {
for ( register int j = 0 ; j < rhs . ncols ( ) ; + + j ) r ( i , j ) = rhs ( i , j ) ;
}
return r ;
}
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//this is general for any type, complexmatrix() uses blas for doubles
template < typename T >
NRMat < std : : complex < T > > complexify ( const NRMat < T > & rhsr , const NRMat < T > & rhsi ) {
NOT_GPU ( rhsr ) ;
NOT_GPU ( rhsi ) ;
if ( rhsr . nrows ( ) ! = rhsi . nrows ( ) | | rhsr . ncols ( ) ! = rhsi . ncols ( ) ) laerror ( " inconsistent dimensions in complexify " ) ;
NRMat < std : : complex < T > > r ( rhsr . nrows ( ) , rhsr . ncols ( ) , rhsr . getlocation ( ) ) ;
for ( register int i = 0 ; i < rhsr . nrows ( ) ; + + i ) {
for ( register int j = 0 ; j < rhsr . ncols ( ) ; + + j ) r ( i , j ) = std : : complex < T > ( rhsr ( i , j ) , rhsi ( i , j ) ) ;
}
return r ;
}
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/***************************************************************************/ /**
* output operator
* @ param [ in , out ] s output stream
* @ param [ in ] x NRMat matrix to be prited out
* @ return modified stream
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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std : : ostream & operator < < ( std : : ostream & s , const NRMat < T > & x ) {
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# ifdef CUDALA
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if ( x . getlocation ( ) = = cpu ) {
# endif
int i ( 0 ) , j ( 0 ) ;
int n ( x . nrows ( ) ) , m ( x . ncols ( ) ) ;
s < < n < < ' ' < < m < < ' \n ' ;
for ( i = 0 ; i < n ; i + + ) {
for ( j = 0 ; j < m ; j + + ) {
// endl cannot be used in the conditional expression, since it is an overloaded function
s < < ( typename LA_traits_io < T > : : IOtype ) x [ i ] [ j ] < < ( j = = m - 1 ? ' \n ' : ' ' ) ;
}
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}
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return s ;
# ifdef CUDALA
} else {
NRMat < T > tmp = x ;
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tmp . moveto ( cpu ) ;
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return s < < tmp ;
}
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# endif
}
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/***************************************************************************/ /**
* input operator
* @ param [ in , out ] s input stream
* @ param [ in ] x NRMat matrix for storing the input
* @ return modified stream
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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std : : istream & operator > > ( std : : istream & s , NRMat < T > & x )
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{
# ifdef CUDALA
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if ( x . getlocation ( ) = = cpu ) {
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# endif
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int i ( 0 ) , j ( 0 ) , n ( 0 ) , m ( 0 ) ;
s > > n > > m ;
x . resize ( n , m ) ;
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typename LA_traits_io < T > : : IOtype tmp ;
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for ( i = 0 ; i < n ; i + + ) {
for ( j = 0 ; j < m ; j + + ) {
s > > tmp ;
x [ i ] [ j ] = tmp ;
}
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}
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return s ;
# ifdef CUDALA
} else {
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NRMat < T > tmp ;
tmp . moveto ( cpu ) ;
s > > tmp ;
tmp . moveto ( x . getlocation ( ) ) ;
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x = tmp ;
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return s ;
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}
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# endif
}
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/***************************************************************************/ /**
* implements \ c NRMat < T > functionality with indexing from 1
* all possible constructors have to be given explicitly , other stuff is inherited
* with exception of the operator ( ) which differs
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
class NRMat_from1 : public NRMat < T > {
public :
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NRMat_from1 ( ) : NRMat < T > ( ) { } ;
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template < int R , int C > explicit NRMat_from1 ( const T ( & a ) [ R ] [ C ] ) : NRMat < T > ( a ) { } ;
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explicit NRMat_from1 ( const int n ) : NRMat < T > ( n ) { } ;
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explicit NRMat_from1 ( const NRSMat_from1 < T > & rhs ) : NRMat < T > ( rhs ) { } ;
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NRMat_from1 ( const NRMat < T > & rhs ) : NRMat < T > ( rhs ) { } ; //!< be able to convert the parent class transparently to this
NRMat_from1 ( const int n , const int m ) : NRMat < T > ( n , m ) { } ;
NRMat_from1 ( const T & a , const int n , const int m ) : NRMat < T > ( a , n , m ) { } ;
NRMat_from1 ( const T * a , const int n , const int m ) : NRMat < T > ( a , n , m ) { } ;
inline const T & operator ( ) ( const int i , const int j ) const {
# ifdef DEBUG
if ( i < 1 | | i > NRMat < T > : : nn | | j < 1 | | j > NRMat < T > : : mm ) laerror ( " index out of range " ) ;
if ( ! NRMat < T > : : v ) laerror ( " unallocated matrix " ) ;
# endif
NOT_GPU ( * this ) ;
# ifdef MATPTR
return NRMat < T > : : v [ i - 1 ] [ j - 1 ] ;
# else
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return NRMat < T > : : v [ ( i - 1 ) * ( size_t ) NRMat < T > : : mm + j - 1 ] ;
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# endif
}
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inline T & operator ( ) ( const int i , const int j ) {
# ifdef DEBUG
if ( _LA_count_check & & * NRMat < T > : : count ! = 1 ) laerror ( " matrix with *count > 1 used as l-value " ) ;
if ( i < 1 | | i > NRMat < T > : : nn | | j < 1 | | j > NRMat < T > : : mm ) laerror ( " index out of range " ) ;
if ( ! NRMat < T > : : v ) laerror ( " unallocated matrix " ) ;
# endif
NOT_GPU ( * this ) ;
# ifdef MATPTR
return NRMat < T > : : v [ i - 1 ] [ j - 1 ] ;
# else
return NRMat < T > : : v [ ( i - 1 ) * NRMat < T > : : mm + j - 1 ] ;
# endif
}
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inline const T get_ij ( const int i , const int j ) const {
T ret ;
# ifdef DEBUG
if ( i < 1 | | i > NRMat < T > : : nn | | j < 1 | | j > NRMat < T > : : mm ) laerror ( " index out of range " ) ;
if ( ! NRMat < T > : : v ) laerror ( " unallocated matrix " ) ;
# endif
# ifdef CUDALA
if ( NRMat < T > : : location = = cpu ) {
# endif
# ifdef MATPTR
return NRMat < T > : : v [ i - 1 ] [ j - 1 ] ;
# else
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return NRMat < T > : : v [ ( size_t ) ( i - 1 ) * NRMat < T > : : mm + ( j - 1 ) ] ;
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# endif
# ifdef CUDALA
} else {
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const size_t pozice = ( size_t ) ( i - 1 ) * NRMat < T > : : mm + ( j - 1 ) ;
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gpuget ( 1 , sizeof ( T ) , NRMat < T > : : v + pozice , & ret ) ;
return ret ;
}
# endif
}
} ;
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/***************************************************************************/ /**
* compute Hadamard ( component - wise ) product with a given matrix \ f $ A \ f $
* @ param [ in ] rhs matrix \ f $ A \ f $
* @ see count , operator *
* @ return reference to the multiplied matrix
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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template < typename T >
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NRMat < T > & NRMat < T > : : operator ^ = ( const NRMat < T > & rhs ) {
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# ifdef DEBUG
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if ( nn ! = rhs . nn | | mm ! = rhs . mm ) laerror ( " incompatible matrices " ) ;
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# endif
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SAME_LOC ( * this , rhs ) ;
NOT_GPU ( * this ) ;
copyonwrite ( ) ; // ensure that *count == 1
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# ifdef MATPTR
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for ( register size_t i = 0 ; i < ( size_t ) nn * mm ; i + + ) v [ 0 ] [ i ] * = rhs . v [ 0 ] [ i ] ;
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# else
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const size_t Dim = ( size_t ) nn * mm ;
for ( register size_t i = 0 ; i < Dim ; i + + ) v [ i ] * = rhs . v [ i ] ;
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# endif
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return * this ;
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}
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/***************************************************************************/ /**
* performs memory movements in CUDA mode
* @ param [ in ] dest memory destination
* @ see count , location
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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# ifdef CUDALA
template < typename T >
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void NRMat < T > : : moveto ( const GPUID dest ) {
if ( location = = dest ) return ; // no operation is necessary
/*
currently , only movements between CPU and GPU are implemented
CUBLAS seems to lack support for multiple GPUs
*/
CPU_GPU ( location , dest ) ;
location = dest ;
if ( v & & ! count ) laerror ( " internal inconsistency of reference counting 1 " ) ;
if ( ! count ) return ;
if ( v & & * count = = 0 ) laerror ( " internal inconsistency of reference counting 2 " ) ;
if ( ! v ) return ;
T * vold = v ;
if ( dest = = cpu ) { //moving from GPU to CPU
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v = new T [ ( size_t ) nn * mm ] ;
gpuget ( ( size_t ) nn * mm , sizeof ( T ) , vold , v ) ;
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if ( * count = = 1 ) { gpufree ( vold ) ; }
else { - - ( * count ) ; count = new int ( 1 ) ; }
} else { //moving from CPU to GPU
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v = ( T * ) gpualloc ( ( size_t ) nn * mm * sizeof ( T ) ) ;
gpuput ( ( size_t ) nn * mm , sizeof ( T ) , vold , v ) ;
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if ( * count = = 1 ) delete [ ] vold ;
else { - - ( * count ) ; count = new int ( 1 ) ; }
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}
}
# endif
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/***************************************************************************/ /**
* add a given general matrix ( type T ) \ f $ A \ f $ to the current complex matrix
* @ param [ in ] rhs matrix \ f $ A \ f $ of type T
* @ return reference to the modified matrix
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
template < typename T >
NRMat < T > & NRMat < T > : : operator + = ( const NRMat < T > & rhs ) {
# ifdef DEBUG
if ( nn ! = rhs . nn | | mm ! = rhs . mm ) laerror ( " incompatible matrices " ) ;
# endif
SAME_LOC ( * this , rhs ) ;
NOT_GPU ( * this ) ;
copyonwrite ( ) ;
# ifdef MATPTR
for ( size_t i = 0 ; i < ( size_t ) nn * mm ; i + + ) v [ 0 ] [ i ] + = rhs . v [ 0 ] [ i ] ;
# else
for ( size_t i = 0 ; i < ( size_t ) nn * mm ; i + + ) v [ i ] + = rhs . v [ i ] ;
# endif
return * this ;
}
/***************************************************************************/ /**
* subtract a given general matrix ( type T ) \ f $ A \ f $ from the current matrix
* @ param [ in ] rhs matrix \ f $ A \ f $ of type T
* @ return reference to the modified matrix
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
template < typename T >
NRMat < T > & NRMat < T > : : operator - = ( const NRMat < T > & rhs ) {
# ifdef DEBUG
if ( nn ! = rhs . nn | | mm ! = rhs . mm ) laerror ( " incompatible matrices " ) ;
# endif
SAME_LOC ( * this , rhs ) ;
NOT_GPU ( * this ) ;
copyonwrite ( ) ;
# ifdef MATPTR
for ( size_t i = 0 ; i < ( size_t ) nn * mm ; i + + ) v [ 0 ] [ i ] - = rhs . v [ 0 ] [ i ] ;
# else
for ( size_t i = 0 ; i < ( size_t ) nn * mm ; i + + ) v [ i ] - = rhs . v [ i ] ;
# endif
return * this ;
}
/*difference of absolute values*/
template < typename T >
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NRMat < typename LA_traits < T > : : normtype > NRMat < T > : : diffabs ( const NRMat < T > & rhs ) const {
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# ifdef DEBUG
if ( nn ! = rhs . nn | | mm ! = rhs . mm ) laerror ( " incompatible dimensions " ) ;
# endif
NOT_GPU ( * this ) ;
NOT_GPU ( rhs ) ;
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NRMat < typename LA_traits < T > : : normtype > r ( nn , mm ) ;
for ( size_t i = 0 ; i < nn ; i + + ) for ( size_t j = 0 ; j < mm ; j + + ) r ( i , j ) = MYABS ( ( * this ) ( i , j ) ) - MYABS ( rhs ( i , j ) ) ;
return r ;
}
/*elementwise absolute values*/
template < typename T >
NRMat < typename LA_traits < T > : : normtype > NRMat < T > : : abs ( ) const {
NOT_GPU ( * this ) ;
NRMat < typename LA_traits < T > : : normtype > r ( nn , mm ) ;
for ( size_t i = 0 ; i < nn ; i + + ) for ( size_t j = 0 ; j < mm ; j + + ) r ( i , j ) = MYABS ( ( * this ) ( i , j ) ) ;
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return r ;
}
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//convert whole matrix between types
template < typename T , typename S >
void NRMat_convert ( NRMat < T > & a , const NRMat < S > & b )
{
a . resize ( b . nrows ( ) , b . ncols ( ) ) ;
for ( int i = 0 ; i < b . nrows ( ) ; + + i )
for ( int j = 0 ; j < b . ncols ( ) ; + + j )
a ( i , j ) = ( T ) b ( i , j ) ;
}
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/***************************************************************************/ /**
* generate operators : Mat + a , a + Mat , Mat * a
* corresponding macro is defined in vec . h
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
NRVECMAT_OPER ( Mat , + )
NRVECMAT_OPER ( Mat , - )
NRVECMAT_OPER ( Mat , * )
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/***************************************************************************/ /**
* generate Mat + Mat , Mat - Mat
* corresponding macro is defined in vec . h
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
NRVECMAT_OPER2 ( Mat , + )
NRVECMAT_OPER2 ( Mat , - )
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} //end of the LA-namespace
# endif /* _LA_MAT_H_ */
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